Converting existing scientific workflows to the new dataflow engine Pydra (Python)
Yibei Chen
Scientific workflows often require sophisticated analyses that encompass an extensive collection of algorithms. In neuroimaging, Nipype (Python) is a...
Digital Microsphere
Harikrishna Pillai
In some organisms like axolotl, the surface of the embryo is transparent and thus allowing us to see the embryogenetic events taking place before the...
Upgrading the source code for the EEG-Notebook Experiment Library
Parv
Conducting Cognitive Neuroscience Experiments has always been limited to research-grade EEG devices that cost tens of thousands of dollars. Since the...
23.1 An Open-Source Software Suite for EEG Artifact Annotation on Web Browsers
garrettmflynn
Artifacts are parts of a measured signal generated from sources other than those of interest. For electroencephalography (EEG) data, artifacts from a...
NEUROsim - Cortical Simulator
rahulsonkar
Cerebral cortex is the outermost layer of the brain and is associated with highest mental capabilities like consciousness, emotion, reasoning,...
INCF GSoC 2022 1.1. Implementation of White Matter Substrates in Disimpy
Renata Cruz
Diffusion MRI is a non-invasive imaging technique which provides information about the cellular structure of the brain tissue at microscopic scale....
Conversion of a public neurophysiology dataset to Neurodata Without Borders (NWB) format
Anh
The ever-growing body of data in Neuroscience, which has been enabled by the advancement of state-of-the-art techniques, calls forth collaborative...
Eye-tracker using deep learning with Python + TensorFlow/Pytorch
Prakanshul Saxena
Eye tracking has varieties of applications ranging across usability and user experience research, gaming, driving, and gaze-based interaction for...
Efficient app-based measurement of visual functions in infants and young children
wizofe
Accurate visual function measurements (e.g., resolution acuity) are vital for assessing vision in clinical practice. It is especially crucial for...
22.1 GNNs as Developmental Networks
Watarungurunnn
I will seek to create GNNs that resemble actual biological networks found throughout development by analyzing time-series microscopy data. This...
1.2 Improving GPU-accelerated Monte Carlo simulations in Disimpy
Joel Hurtado Moreno
Several attempts have been made in recent years to develop, collect and analyze data in the field of neuroscience. This proposal aims at helping...
DevoGraph: Modeling Cell Developmental Process of C. elegans using Graph Neural Network
Jiahang Li
DevoGraph is an open-source framework that models cell developmental process as graphs, extracts and converts latent information into high-level...
21.1 A Collective Cognition Model for AI Ethics
Himanshu Chougule
A Collective Cognition Model to serve as automated guidelines to open source communities. The model will project the activities, interrelationships,...
Eye-Tracker using Deep Learning with Python + TensorFlow/Pytorch
Somnath Sharma
Eye tracking can be used for a range of purposes, from improving accessibility for people with disabilities to improving driver safety. However,...
Developing a tool to easily store data and study details
Dinara Issagaliyeva
The project aims to create a user-friendly GUI to select simulation results and convert them to a BIDS-compliant structure following the BEP034...
A GPU-accelerated Model of the Mouse Primary Visual Cortex
William Snider
PyGeNN is a Python package for simulating spiking neural networks using GPUs. For this project, I will construct and simulate a PyGeNN model of the...
TVB Data Importer
Akash Upadhyay
The Virtual Brain (TVB) is a brain stimulation platform. It offers tools for computing, simulating and analyzing functional and structural data of...
Improving Graphical Interface and User Experience for AnalySim
Ahkeelah Lindo
I am planning to improve how AnalySim looks by simplifying pages to assure that it is both practical and easy for users to navigate through it. I...
Ethical Regulators: Could they prove valuable for AI ethics?
SHussainAther
During Google Summer of Code 2022, I propose a project in which these feedback loops (recurrent relationships) and causal loops (reciprocal...
Automatic reviewer matching using Natural Language Processing: Infrastructure for NBDT Journal
Mrunal Prakash Gavali
Building recommendation engine for suggesting reviewers using Natural Language Processing and Huggingface library. I will be using the editors’...
17.1: Adding BIDS Prov to new dataflow engine written in Python: Pydra
RyanCali
This project aims to add brain imaging data structure (BIDS) provenance to a workflow engine written in Python called ‘Pydra’. The brain imaging data...
Automatic Reviewer Matching Using Natural Language Processing: Infrastructure for NBDT Journal
Alan (Bangyan) Zhang
The peer-review process is one of the most crucial processes in science, yet the process can be burdensome and is not free of bias. As the research...
Simulating multiscale models of the mouse visual cortex in NeuroML
Anuja Negi
Computational models, based on detailed neuroanatomical and electrophysiological data, are heavily used as an aid for understanding the brain. An...
Eye-tracker using deep learning with Python + TensorFlow/Pytorch
Abhinav Venkatadri
Eye tracking has varieties of applications, ranging across usability and user experience research, gaming, driving, and gaze-based interaction for...
Contribute to LORIS: Development of modules and API
Satvik Singh
This is a proposal to focus on general web development of LORIS modules and API, mentioning key deliverables such as familiarization with the LORIS...
AnalySim
Joseph Ongchangco
Editing CSV/Displaying CSV files CSV file viewing and sorting for AnalySim datasets, that can be sorted and filtered. I will study how to create and...
13.1 Integration of automated model testing and parameter fitting for neuroscience applications
Martin Blazsek
Biologically detailed models are useful tools in neuroscience, and automated methods are now routinely applied to construct and validate such models...
A Collective Cognition Model for AI Ethics
Brian McCorkle
The proposed project is an approach to the problems of sustainability and collective cognition within small open-source organizations, proceeding in...
Creating Benchmark Datasets for Object Recognition with Event-based Cameras
Neelay Shah
Event-based vision is a subfield of computer vision that deals with data from event-based cameras. Event cameras, also known as neuromorphic cameras,...
9.1 Open source, cross simulator, large scale cortical models in NeuroML and PyNN
Shayan Shafquat
NeuroML and PyNN are open, simulation independent formats that are used to convert large scale network models. Network models incorporating realistic...
Developing a Latex to XML pipeline and exploring a standalone platform for NBDT Journal
Naresh Kumar B
I am planning to develop a Latex to XML pipeline and adapt the final format to PMC requirements and integrate the pipeline with the current...
A GUI for HNN-core with ipywidgets and the calculation and visualization of CSD signals
Huzi Cheng
GUI: In this part, we aim to build a new GUI for HNN, using the HNN core functions and open source practices, in the form of an ipywidget. Mimicking...
Modelling Axolotl Embryos (Proposal for Project Idea 22.2 Digital Microsphere)
Karan Lohaan
The main objective of this project is to generate a 3D model based on a set of 2D axolotl embryo images to aid as a research tool. The problem can be...
Developing a LaTeX to XML Pipeline and Exploring a Standalone Platform for NBDT Journal
Amogh Johri
The platinum open access overlay neuroscience journal - Neurons, Behavior, Data Analysis, and Theory – NBDT is ready for inclusion in PubMed Central...
Automatic reviewer matching using Natural Language Processing: Infrastructure for NBDT Journal
Varshita Kolipaka
It often becomes taxing for editors to assign reviewers to a paper in journals, simply because of the vast number of potential reviewers, or even if...