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Developing open source tools for network biology
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Automate Cytoscape.js release process using GitHub Actions
Development of a Cytoscape App for microbe-microbe association networks
Microbial associations play a fundamental part in deciphering underlying mechanisms of microbial communities. A series of algorithms have been...
Generate Example Dataset for PyTorch Geometric Based on Pathway Commons and Prototype
The main goal of this project is to create a PyTorch Geometric(PyG) dataset by integrating the cBioPortal and Pathway Commons datasets and provide a...
Supporting Pathway Commons and ssGSEA in clusterProfiler
clusterProfiler is an efficient package that provides a universal interface for gene functional annotation from a variety of resources and is...
Develop new features for Cytoscape App-cyPlot
Kartik Kumar Pawar
This project involves updating cyPlot(a Cytoscape app written in JAVA) which provides the ability to plot data through GUI or CyCommands/REST. CyPlot...
Setting up the CI/CD Pipeline using Github Actions on GraphSpace
Currently the Graphspace code repository has a lot of mismatched dependency issues & consist no automating techniques in their repository to release...
Convert CellBox Tensorflow code to Pytorch
CellBox is a model for predicting cell states under drug perturbations, whose code base was originally written in Tensorflow 1. Since Tensorflow 1...
Implement a R Shiny module for Network Analysis in CellMinerCDB
CellMinerCDB provides a web-based resource for integrating multiple forms of pharmacological and genomic analyses, and unifying the richest cancer...