The goal of this project is to add new functionalities to Newt to be able to create biological maps in GPML format from scratch or edit existing...
Machine Learning Support for Constructing Newt SBGN Maps
Umut Utku ERŞAHİNCE
In this proposal, I explain the machine learning support I aim to implement to generate SBGN maps. I am planning to make an API connection to a...
Integration of complexity score functions into the iGEM DNA kit distribution workflow
Johan Guillen
The goal is developing an updated workflow that uses the existing iGEM distribution structure to integrate a synthesizability assessment of genetic...
ASCETIC Vision
Nada Mohamed
This project aims to enhance the accessibility and usability of the ASCETIC framework, which interprets tumor evolutionary signatures crucial for...
Integration of GRN inference algorithms using single cell multi-omics data to BEELINE
BB Vishnu Madhav
BEELINE is a bench marking tool that evaluates different methods and models that infer Gene Regulatory Networks (GRN) from Single cell gene...
COBRAxy: COBRA and MaREA4Galaxy
Luca Milazzo
MaREA4Galaxy is a user-friendly tool designed to facilitate the characterization and graphical comparison of sample groups exhibiting distinct...
Implement AWS DevOps Pipeline for Image Deployment for Graphspace
Deep Poharkar
Project mainly focuses on automating image deployment to an EC2 instance via an AWS DevOps pipeline. Key tasks involve setting up an AWS account with...
Large Language Model-based creation of knowledge graph from a publication
Favour James
This project proposes the development of a Python web application that utilizes Large Language Models (LLMs) for extracting, transforming, and...
Using Foundation Model: scGPT for Gene Regulatory Network Inference
Faizal Rahman
The project aims to develop a robust pipeline for assessing the performance of foundation models, specifically focusing on scGPT, in generating...
Cytoscape layout plugin to support Cytoscape.js layouts
Tushar Choudhary
Cytoscape Desktop Application serves as a powerful tool for network analysis and visualization. However, its layout options are limited compared to...
Improvement Of openPIP (Data upload & Visualization)
Mohamed Soudy
OpenPIP platform is typically necessary alongside a research paper detailing experimental data, alongside depositing the data into a standard...
