The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of various community standards and formats in...
Updates to the Enrichment Table App
Akash Mondal
This proposal aims to implement new features to the Enrichment Table App. The major features improvement are adding an automated testing framework...
Adding visualization of protein-complex interaction to OpenPIP
Aniket Ranjan
OpenPIP (Open Source Protein Interaction Platform) is an open-source software package for hosting protein-protein interaction (PPI) data based on the...
High-throughput simulation for computational cell biology with Cloud-COPASI
Fizza Rubab
Customized SSH Authentication Free Implementation of the Cloud-COPASI for UConn users: The project proposal aims to create a customized version of...
Customization of Analysis Report of GeneCloudOmics
Kundey Vishwanath
GeneCloudOmics generates a report that contains the results of the analysis done by the user and this report is customizable and can be saved in PDF...
Conversion between GenBank and SBOL3
Mohit Makwana
The SBOL-Utilities repository is a python library that provides many useful methods and utilities on top of the main PySBOL3 implementation of SBOL3....
NetBoxR Updates
Sara J
netboxr is an R package for the automated discovery of biological process modules by network analysis. The project I'm applying for is part of the...
SBML-MINERVA support in Newt
Selbi Ereshova
Currently, the Newt editor supports Systems Biological Graphical Notation (SBGN) and Simple Interactive Format (SIF) formats while also allowing...
AnnotateMe - Interactive Tool For Annotation of SBML Models
utkarsh_uc
In recent years an interactive report for SBML could be established (https://sbml4humans.de), which allows the display and navigation of models in...
Create a Pipeline from data extraction to execution of GNN based Drug Response Prediction
Yoshitaka Inoue
The use of machine learning models in medicine is expanding, but there are still undergoing due to the interpretability. One useful example which has...