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Open Bioinformatics Foundation (OBF)
Open Source & Open Science in biological research
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Open Source Bioinformatics
Genestorian data refinement
Genstorian data refinement tool is pipeline to identify allele names in genotype of a model organism and strain information related to the allele...
Feature Viewer - Enhanced User Experience and Performance
Analyzing positional features/annotations in sequences is important in bioinformatics. Visualizing such data is quite a challenging task, considering...
Migration of the backend to Express, GraphQL, and MongoDB
Currently, the backend of the journal policy tracker is on Flask and SQLite3. The goal for this project is to create a full-fledged functioning...
Improving automated wrapping of C++ code in Python (OpenMS/autowrap)
Add support for C++ STL objects to the Autowrap package. This will be accomplished by improving both the .pxd parse and the code generator components...
Implement IO Module for MzMLb, A Space- and Time-efficient Data Format for Mass Spectrometry Data
Mass spectrometry (MS) is a popular method in proteomics, metabolomics and protein interaction analysis. OpenMS is one of the most widely...
Journal tracker – finalise and deploy React front-end
The project aims at helping researchers find journals that require open source code easily. I aim to create a user interface that could seamlessly...
Efficient data layout for mass spectrometry data (OpenMS)
In this project, we need to implement a zero-cost abstraction using Modern C++, which can help us to switch between Structure of Arrays (SoA) and...