Accelerated Read/Write and Robust OpenMS Workflows (ARROW)
Avni Badiwale
This is a biparted project in which we first focus on integrating Apache Arrow into OpenMS’s build system and dependency management framework, as...
Optimizing Casanovo for Fast and Accurate De Novo Peptide Sequencing
lingwen xu
I'm tackling Casanovo's slow beam search decoding, which stalls big proteomics datasets. By reducing GPU-CPU transfers and removing redundant steps,...
